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Hydrophobic interactions at subsite S1' of human dipeptidyl peptidase IV contribute significantly to the inhibitory effect of tripeptides , Araki M, Kanegawa N, Iwata H, Sagae Y, Ito K, Masuda K, Okuno Y , Heliyon , 2020 , There is Review , The Multiple Authorship , English
Improving the accuracy of protein-ligand binding mode prediction using a molecular dynamics-based pocket generation approach , Araki M, Iwata H, Ma B, Fujita A, Terayama K, Sagae Y, Ono F, Tsuda K, Kamiya N, Okuno Y , Journal of Computational Chemistry , 2018.12 , There is Review , The Multiple Authorship , English
Machine Learning Accelerates MD-based Binding-Pose Prediction between Ligands and Proteins , Terayama K, Iwata H, Araki M, Okuno Y, Tsuda K , Bioinformatics , 2018.10 , There is Review , The Multiple Authorship , English
CGBVS-DNN: Prediction of Compound-protein Interactions Based on Deep Learning , Hamanaka M, Taneishi K, Iwata H, Ye J, Pei J, Hou J, Okuno Y , Molecular Informatics , 2017.08 , There is Review , The Multiple Authorship , English
Elucidating the modes of action for bioactive compounds in a cell-specific manner by large-scale chemically-induced transcriptomics , Iwata M, Sawada R, Iwata H, Kotera M, Yamanishi Y , Scientific Reports , 2017.01 , There is Review , The Multiple Authorship , English
Large-Scale Prediction of Beneficial Drug Combinations Using Drug Efficacy and Target Profiles , Iwata H, Sawada R, Mizutani S, Kotera M, Yamanishi Y , Journal of chemical information and modeling , 2015.12 , There is Review , The Multiple Authorship , English
Target-based drug repositioning using large-scale chemical-protein interactome data , Sawada R, Iwata H, Mizutani S, Yamanishi Y , Journal of chemical information and modeling , 2015.11 , There is Review , The Multiple Authorship , English
Conservation of structure and Function in vertebrate c-FLIP proteins despite rapid evolutionary change , Sakamaki K, Iwabe N, Iwata H, Imai K, Takagi C, Chiba K, Shukunami C, Tomii K, Ueno N , Biochemistry and Biophysics Reports 3 , 2015.08 , There is Review , The Multiple Authorship , English
Systematic Drug Repositioning for a Wide Range of Diseases with Integrative Analyses of Phenotypic and Molecular Data , Iwata H, Sawada R, Mizutani S, Yamanishi Y , Journal of chemical information and modeling , 2015.01 , There is Review , The Multiple Authorship , English
The apoptotic initiator caspase-8: its functional ubiquity and genetic diversity during animal evolution , Sakamaki K, Shimizu K, Iwata H, Imai K, Satou Y, Funayama N, Nozaki M, Yajima M, Nishimura O, Higuchi M, Chiba K, Yoshimoto M, Kimura H, Gracey AY, Shimizu T, Tomii K, Gotoh O, Akasaka K, Sawasaki T, Miller DJ , Molecular Biology and Evolution , 2014.09 , There is Review , The Multiple Authorship , English
Inferring protein domains associated with drug side effects based on drug-target interaction network , Iwata H, Mizutani S, Tabei Y, Kotera M, Goto S, Yamanishi Y , BMC Systems Biology , 2013.12 , There is Review , The Multiple Authorship , English
Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features , Iwata H, Gotoh O , Nucleic Acids Research , 2012.07 , There is Review , The Multiple Authorship , English
Comparative analysis of information contents relevant to recognition of introns in many species , Iwata H, Gotoh O , BMC Genomics , 2011.01 , There is Review , The Multiple Authorship , English