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Inference of Genetic Networks from Steady-state and\\ Pseudo Time-series of Single-cell Gene Expression Data using Modified Random Forests , S.Kimura, H.Kitajima, M.Tokuhisa, M.Okada , Proc. of the 2023 IEEE Symposium Series on Computational Intelligence , vol.1 (p.1579 - 1586) , 2023 , There is Review , The Multiple Authorship , English
Inference of Genetic Networks using Random Forests: Performance Improvement using a New Variable Importance Measure , S.Kimura, Y.Takeda, M.Tokuhisa, M.Okada , Chem-Bio Informatics Journal , vol.22 (p.88 - 109) , 2022 , There is Review , The Multiple Authorship , English
Inference of Genetic Networks using Random Forests: A Quantitative Weighting Method for Gene Expression Data , S.Kimura, K.Sota, M.Tokuhisa , Proc. of the 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology , vol.1 (p.123 - 130) , 2022 , The Multiple Authorship , English
Feature Selection using Modified Null Importance , S.Kimura, D.Oda, M.Tokuhisa , Proc. of the 2021 IEEE Symposium Series on Computational Intelligence , vol.1 (p.1 - 7) , 2021 , The Multiple Authorship , English
Detection of Weak Relevant Variables using Random Forests , S.Kimura and M.Tokuhisa , Proc. of the SICE Annual Conference 2020 (p.838 - 845) , 2020 , There is Review , The Multiple Authorship , English
Inference of genetic networks from time-series and static gene expression data: combining a random-forest-based inference method with feature selection methods , S.Kimura, R.Fukutomi, M.Tokuhisa and M.Okada , Frontiers in Genetics , vol.11 (595912) (p.1 - 11) , 2020 , There is Review , The Multiple Authorship , English
Inference of Genetic Networks using Random Forests: Assigning Different Weights for Gene Expression Data , S.Kimura, M.Tokuhisa, M.Okada , Journal of Bioinformatics and Computational Biology , vol.17 (4) (p.1950015 - ) , 2019 , The Multiple Authorship , English
Feature Selection based on Random Forests and its Application to a Modeling of Sewage Treatment Plant , S.Kimura, M.Tokuhisa, A.Uemura, M.Okada , Proc of the 24th International Conference on Technologies and Applications of Artificial Intelligence , vol.0 (0) (p.1 - 6) , 2019 , There is Review , The Multiple Authorship , English
Service-oriented Utterance Sentence Analysis in Small Computers , M.Tokuhisa, S.Kimura , Journal of Natural Language Processing , vol.26 (3) (p.545 - 578) , 2019 , There is Review , The Multiple Authorship , Japanese
Transcriptionally inducible Pleckstrin homology-like domain family A member 1 attenuates ErbB receptor activity by inhibiting receptor oligomerization , S.Magi, K.Iwamoto, N.Yumoto, M.Hiroshima, T.Nagashima, R.Ohki, A.Garcia-Munoz, N.Volinsky, A. von Kriegsheim, Y.Sako, K.Takahashi, B.N.Kholodenko, S.Kimura, M.Okada-Hatakeyama , J. of Biological Chemistry , vol.293 (p.2206 - 2218) , 2018 , There is Review , The Multiple Authorship , English
Inference of Genetic Networks Using Random Forests: Use of Different Weights for Time-series and Static Gene Expression Data , S.Kimura, M.Tokuhisa and M. Okada-Hatakeyama , Proc. of the 18th IEEE International Conference on Bioinformatics and Bioengineering (p.98 - 103) , 2018 , There is Review , The Multiple Authorship , English
Using A Priori Knowledge after Genetic Network Inference: Integrating Multiple Kinds of Knowledge , S.Kimura, K.Kitazawa, M.Tokuhisa, M.Okada-Hatakeyama , Chem-Bio Informatics Journal , vol.17 (p.53 - 71) , 2017 , There is Review , The Multiple Authorship , English
Inference of Genetic Networks from Time-series of Gene Expression Levels Using Random Forests , S.Kimura, M.Tokuhisa, M. Okada-Hatakeyama , Proc. of the 2017 Conference on Computational Intelligence in Bioinformatics and Computational Biology , vol.1 (p.22 - 27) , 2017 , There is Review , The Multiple Authorship , English
Genetic Network Inference using Hierarchical Structure , S.Kimura, M.Tokuhisa, M.Okada-Hatakeyama , Frontiers in Physiology , vol.7 (57) (p.1 - 12) , 2016 , There is Review , The Multiple Authorship , English
Recommending Paragraphs of Wikipedia Pages as a Travel Guide , M.Tokuhisa, Y.Ishihara, S.Kimura, K.Oku , Proc. of the 9th International Workshop on Computational Intelligence and Applications (p.57 - 62) , 2016 , There is Review , The Multiple Authorship , English
Simultaneous Execution Method of Gene Clustering and Network Inference , S.Kimura, M.Tokuhisa, M. Okada-Hatakeyama , Proc. of the 2016 Conference on Computational Intelligence in Bioinformatics and Computational Biology (p.1 - 7) , 2016 , There is Review , The Multiple Authorship , English
Improvement of Reliabilities of Regulations using a Hierarchical Structure in a Genetic Network , S.Kimura, M.Okada-Hatakeyama , Proc. of the 2015 International Joint Conference on Neural Networks (p.485 - 491) , 2015 , There is Review , The Multiple Authorship , English
An Effective Method for the Inference of Reduced S-system Models of Genetic Networks , S.Kimura, M.Sato, M.Okada-Hatakeyama , IPSJ Transactions on Bioinformatics , vol.7 (p.30 - 38) , 2014.12 , There is Review , The Multiple Authorship , English
A Fast Parameter Estimation Method for Inferring Reduced S-system Models of Genetic Networks , S.Kimura, M. Furuta, M. Sato, M. Okada-Hatakeyama , Proc. of 2014 International Conference on Information Systems and Computing Technology (p.45 - 50) , 2014.10 , There is Review , The Multiple Authorship , English
Positive Feedback within a Kinase Signaling Complex Functions as a Switch Mechanism for NF-kB Activation , H.Shinohara, M.Behar, K.Inoue, M.Hiroshima, T.Yasuda, T.Nagashima, S.Kimura, H.Sanjo, S.Maeda, N.Yumoto, S.Ki, S.Akira, Y.Sako, A.Hoffmann, T.Kurosaki, M.Okada-Hatakeyama , Science , vol.344 (p.760 - 764) , 2014 , There is Review , The Multiple Authorship , English
Inference of Vohradsky's Models of Genetic Networks by solving Two-dimensional Function Optimization Problems , S.Kimura, M.Sato, M.Okada-Hatakeyama , PLoS One , vol.8 (e83308) (p.1 - 11) , 2013 , There is Review , The Multiple Authorship , English
Development of an Efficient Parameter Estimation Method for the Inference of Vohradsky's Neural Network Models of Genetic Networks , S.Kimura, M.Sato, M.Okada-Hatakeyama , Proc. of the 2013 International Joint Conference on Neural Networks (p.2676 - 2681) , 2013 , There is Review , The Multiple Authorship , English
Inference of S-system Models of Genetic Networks by Solving One-dimensional Function Optimization Problems , S.Kimura, D.Araki, K.Matsumura, M.Okada-Hatakeyama , Mathematical Biosciences , vol.235 (2) (p.161 - 170) , 2012 , There is Review , The Multiple Authorship , English
Optimization of Feature Extraction Filter for Facial Expression Utilizing GP , K.Matsumura, S.Shinmei, S.Kimura , The transactions of the Institute of Electrical Engineers of Japan. C , vol.132 (10) (p.1656 - 1666) , 2012 , There is Review , The Multiple Authorship , Japanese
Computation of Restoration of Ligand Response in the Random Kinetics of a Prostate Cancer Cell Signaling Pathway , S.Dana, T.Nakakuki, M.Hatakeyama, S.Kimura and S.Raha , Computer Methods and Programs in Biomedicine , vol.101 (1) (p.1 - 22) , 2011 , There is Review , The Multiple Authorship , English
Constrained Multimodal Function Optimization using a Simple Evolutionary Algorithm , S.Kimura, K.Matsumura , Proc. of the 2011 Congress on Evolutionary Computation (p.447 - 454) , 2011 , There is Review , The Multiple Authorship , English
AGLSDC: a Genetic Local Search Suitable for Parallel Computation , S.Kimura, T.Nakakuki, S.Kirita, M.Okada , SICE Journal of Control, Measurement, and System Integration , vol.4 (2) (p.105 - 113) , 2011 , There is Review , The Multiple Authorship , English
Efficient Parameter Estimation for the Inference of S-system Models of Genetic Networks: Proposition of Further Problem Decomposition and Alternate Function Optimization , S.Kimura, K.Matsumura, M.Okada-Hatakeyama , Chem-Bio Informatics Journal , vol.11 (p.24 - 40) , 2011 , There is Review , The Multiple Authorship , English
Effective Parameter Estimation for S-system Models using LPMs and Evolutionary Algorithms , S.Kimura, Y.Amano, K.Matsumura and M.Okada-Hatakeyama , Proc. of the 2010 Congress on Evolutionary Computation , vol.0 (0) (p.2034 - 2041) , 2010 , The Multiple Authorship , English
Bootstrap Analysis of Genetic Networks inferred by the Method using LPMs , S.Kimura, K.Matsumura, M.Okada-Hatakeyama , Proc. of the 2010 International Conference on Computational Science and its Applications (p.296 - 299) , 2010 , There is Review , The Multiple Authorship , English
Automatic Generation of English-Japanese Translation Pattern Utilizing Genetic Programming Technique , K.Matsumura,Y.Tamekuni,S.Kimura , IEEJ Transactions on Electronics, Information and Systems , vol.130 (6) (p.1078 - 1088) , 2010 , There is Review , The Multiple Authorship , Japanese
Inferring Cluster-based Networks from Differently Stimulated Multiple Time-course Gene Eexpression Data , Y.Shiraishi, S.Kimura and M.Okada , Bioinformatics , vol.26 (8) (p.1073 - 1081) , 2010 , There is Review , The Multiple Authorship , English
Inference of Genetic Networks using LPMs: Assessment of Confidence Values of Regulations , S.Kimura, Y.Shiraishi and M.Okada , Journal of Bioinformatics and Computational Biology , vol.8 (4) (p.661 - 677) , 2010 , There is Review , The Multiple Authorship , English
The Transcriptional Network that Controls Growth Arrest and Differentiation in a Human Myeloid Leukemia Cell Line , Harukazu Suzuki,Alistair R R Forrest,Erik van Nimwegen,Carsten O Daub,Piotr J Balwierz,Katharine M Irvine,Timo Lassmann,Timothy Ravasi,Yuki Hasegawa,Michiel J L de Hoon,Shintaro Katayama,Kate Schroder,Piero Carninci,Yasuhiro Tomaru,Mutsumi Kanamori-Katayama,Atsutaka Kubosaki,Altuna Akalin,Yoshinari Ando,Erik Arner,Maki Asada,Hiroshi Asahara,Timothy Bailey,Vladimir B Bajic,Denis Bauer,Anthony G Beckhouse,Nicolas Bertin,Johan Björkegren,Frank Brombacher,Erika Bulger,Alistair M Chalk,Joe Chiba,Nicole Cloonan,Adam Dawe,Josee Dostie,Pär G Engström,Magbubah Essack,Geoffrey J Faulkner,J Lynn Fink,David Fredman,Ko Fujimori,Masaaki Furuno,Takashi Gojobori,Julian Gough,Sean M Grimmond,Mika Gustafsson,Megumi Hashimoto,Takehiro Hashimoto,Mariko Hatakeyama,Susanne Heinzel,Winston Hide,Oliver Hofmann,Michael Hörnquist,Lukasz Huminiecki,Kazuho Ikeo,Naoko Imamoto,Satoshi Inoue,Yusuke Inoue,Ryoko Ishihara,Takao Iwayanagi,Anders Jacobsen,Mandeep Kaur,Hideya Kawaji,Markus C Kerr,Ryuichiro Kimura,Syuhei Kimura,Yasumasa Kimura,Hiroaki Kitano,Hisashi Koga,Toshio Kojima,Shinji Kondo,Takeshi Konno,Anders Krogh,Adele Kruger,Ajit Kumar,Boris Lenhard,Andreas Lennartsson,Morten Lindow,Marina Lizio,Cameron Macpherson,Norihiro Maeda,Christopher A Maher,Monique Maqungo,Jessica Mar,Nicholas A Matigian,Hideo Matsuda,John S Mattick,Stuart Meier,Sei Miyamoto,Etsuko Miyamoto-Sato,Kazuhiko Nakabayashi,Yutaka Nakachi,Mika Nakano,Sanne Nygaard,Toshitsugu Okayama,Yasushi Okazaki,Haruka Okuda-Yabukami,Valerio Orlando,Jun Otomo,Mikhail Pachkov,Nikolai Petrovsky,Charles Plessy,John Quackenbush,Aleksandar Radovanovic,Michael Rehli,Rintaro Saito,Albin Sandelin,Sebastian Schmeier,Christian Schönbach,Ariel S Schwartz,Colin A Semple,Miho Sera,Jessica Severin,Katsuhiko Shirahige,Cas Simons,George St Laurent,Masanori Suzuki,Takahiro Suzuki,Matthew J Sweet,Ryan J Taft,Shizu Takeda,Yoichi Takenaka,Kai Tan,Martin S Taylor,Rohan D Teasdale,Jesper Tegnér,Sarah Teichmann,Eivind Valen,Claes Wahlestedt,Kazunori Waki,Andrew Waterhouse,Christine A Wells,Ole Winther,Linda Wu,Kazumi Yamaguchi,Hiroshi Yanagawa,Jun Yasuda,Mihaela Zavolan,David A Hume,Takahiro Arakawa,Shiro Fukuda,Kengo Imamura,Chikatoshi Kai,Ai Kaiho,Tsugumi Kawashima,Chika Kawazu,Yayoi Kitazume,Miki Kojima,Hisashi Miura,Kayoko Murakami,Mitsuyoshi Murata,Noriko Ninomiya,Hiromi Nishiyori,Shohei Noma,Chihiro Ogawa,Takuma Sano,Christophe Simon,Michihira Tagami,Yukari Takahashi,Jun Kawai,Yoshihide Hayashizaki , Nature Genetics , vol.41 (5) (p.553 - 562) , 2009 , There is Review , The Multiple Authorship , English
Genetic Network Inference as a Series of Discrimination Tasks , S.Kimura, S.Nakayama, M.Hatakeyama , Bioinformatics , vol.25 (7) (p.918 - 925) , 2009 , There is Review , The Multiple Authorship , English
Function approximation approach to the inference of reduced NGnet models of genetic networks , S.Kimura, K.Sonoda, S.Yamane, H.Maeda, K.Matsumura and M.Hatakeyama , BMC Bioinformatics , vol.9 (23) (p.1 - 13) , 2008 , There is Review , The Multiple Authorship , English
Density Estimation using Crossover Kernels and its Application to a Real-coded Genetic Algorithm , S.Kimura, K.Matsumura , Proc. of the 2008 Congress on Evolutionary Computation (p.694 - 701) , 2008 , There is Review , The Multiple Authorship , English
Inference of Genetic Networks using a Reduced NGnet Model , S.Kimura, K.Sonoda, S.Yamane, K.Yoshida, K.Matsumura and M.Hatakeyama , Proc. of the 2007 International Joint Conference on Neural Networks , vol.0 (0) (p.932 - 937) , 2007 , The Multiple Authorship , English
Function Approximation Approach to the Inference of Neural Network Models of Genetic Networks , S.Kimura, K.Sonoda, S.Yamane, K.Matsumura, M.Hatakeyama , IPSJ Transactions on Bioinformatics , vol.48 (SIG5) (p.9 - 19) , 2007 , There is Review , The Multiple Authorship , English
Improvement of the Performances of Genetic Algorithms by Using Low-discrepancy Sequences , S.Kimura and K.Matsumura , Transactions of the Society of Instrument and Control Engineers , vol.E-6 (1) (p.16 - 25) , 2007 , There is Review , The Multiple Authorship , English
Agent Based Trader Model Utilizing Genetic Programming Approach , K.Matsumura, Y.Kuniya, S.Kimura , Journal of Information Processing , vol.47 (9) (p.2869 - 2886) , 2006 , There is Review , The Multiple Authorship , Japanese
Function Approximation Approach to the Inference of Normalized Gaussian Network Models of Genetic Networks , S.Kimura, K.Sonoda, S.Yamane, K.Matsumura, M.Hatakeyama , Proc. of the 2006 International Joint Conference on Neural Networks (p.4525 - 4532) , 2006 , There is Review , The Multiple Authorship , English
Improvement of the Performances of Genetic Algorithms by Using Low-discrepancy Sequences , K.Matsumura, S.Kimura , Trans. of the Society of Instrument and Control Engineers , vol.42 (6) (p.659 - 667) , 2006 , There is Review , The Multiple Authorship , Japanese
Genetic Algorithms using Low-Discrepancy Sequences , S.Kimura and K.Matsumura , Proc. of Genetic and Evolutionary Computation Conference 2005 , vol.0 (0) (p.1341 - 1346) , 2005 , The Multiple Authorship , English
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm , S.Kimura, K.Ide, A.Kashihara, M.Kano, M.Hatakeyama, R.Masui, N.Nakagawa, S.Yokoyama, S.Kuramitsu and A.Konagaya , Bioinformatics , vol.21 (7) (p.1154 - 1163) , 2005 , There is Review , The Multiple Authorship , English
Inference of Genetic Networks using Neural Network Models , S.Kimura, K.Sonoda, S.Yamane, K.Matsumura and M.Hatakeyama , Proc. of the 2005 Congress on Evolutionary Computation , vol.0 (0) (p.1738 - 1745) , 2005 , The Multiple Authorship , English
A Cooperative Coevolutionary Approach to the Inference of Genetic Networks , S.Kimura, M.Hatakeyama and A.Konagaya , Proc. of Joint 2nd Int. Conf. on Soft Computing and Intelligent Systems and 5th Int. Symp. on Advanced Intelligent Systems , vol.0 (0) (p.0) , 2004 , The Multiple Authorship , English
Inference of S-system Models of Genetic Networks from Noisy Time-series Data , S.Kimura, M.Hatakeyama, A.Konagaya , Chem-Bio Informatics Journal , vol.4 (1) (p.1 - 14) , 2004 , There is Review , The Multiple Authorship , English
OBIYagns : A Grid-based Biochemical Simulator with a Parameter Estimator , S.Kimura, T.Kawasaki, M.Hatakeyama, T.Naka, F.Konishi and A.Konagaya , Bioinformatics , vol.20 (10) (p.1646 - 1648) , 2004 , There is Review , The Multiple Authorship , English
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